3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08625

Details:

PFam ID : PF08625

PFam Domain Description : Utp13 specific WD40 associated domain

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 145

Average sequence length: 140.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08625	A5K7F6_PLAVS_1040_1140	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08625	E3KJN8_PUCGT_672_867	100

Sequence based PCA Plot of the family - PF08625 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=124 Length=8
Motif4 Start=82 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay