3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08624

Details:

PFam ID : PF08624

PFam Domain Description : Chromatin remodelling complex Rsc7/Swp82 subunit

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 69

Average sequence length: 137.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08624	B6K5M9_SCHJY_107_268	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08624	Q6FLW5_CANGA_61_205	100

Sequence based PCA Plot of the family - PF08624 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=40 Length=8
Motif3 Start=116 Length=8
Motif4 Start=130 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay