3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08623

Details:

PFam ID : PF08623

PFam Domain Description : TATA-binding protein interacting (TIP20)

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 118

Average sequence length: 160.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08623	A0CZJ2_PARTE_1012_1156	72.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08623	B6KSK2_TOXGO_1496_1694	100

Sequence based PCA Plot of the family - PF08623 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=130 Length=8
Motif3 Start=31 Length=11
Motif4 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay