3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08619

Details:

PFam ID : PF08619

PFam Domain Description : Alkali metal cation/H+ antiporter Nha1 C terminus

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 76

Average sequence length: 398.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08619	Q59KU3_CANAL_508_627	79.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08619	C4R4H2_PICPG_464_588	100

Sequence based PCA Plot of the family - PF08619 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=199 Length=8
Motif2 Start=327 Length=14
Motif3 Start=532 Length=11
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay