3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08614

Details:

PFam ID : PF08614

PFam Domain Description : Autophagy protein 16 (ATG16)

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 125

Average sequence length: 172.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08614	B7P306_IXOSC_9_122	67.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08614	E6ZRR5_9BASI_9_220	100

Sequence based PCA Plot of the family - PF08614 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=106 Length=8
Motif4 Start=94 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay