3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08612

Details:

PFam ID : PF08612

PFam Domain Description : TATA-binding related factor (TRF) of subunit 20 of Mediator complex

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 108

Average sequence length: 223.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08612	B9MXS4_POPTR_2_88	67.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08612	A2DDB2_TRIVA_1_185	100

Sequence based PCA Plot of the family - PF08612 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=24 Length=8
Motif3 Start=182 Length=8
Motif4 Start=130 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay