3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08609

Details:

PFam ID : PF08609

PFam Domain Description : Ferredoxin thioredoxin reductase variable alpha chain

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 108

Average sequence length: 92.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08609	E3K7D8_PUCGT_1_119	84

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08609	C1E4Z7_MICSR_61_181	100

Sequence based PCA Plot of the family - PF08609 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=16 Length=8
Motif3 Start=7 Length=8
Motif4 Start=78 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay