3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08608

Details:

PFam ID : PF08608

PFam Domain Description : Wyosine base formation

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 238

Average sequence length: 61.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08608	E6NBM5_9ARCH_260_285	28.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08608	F0VNY9_NEOCA_418_501	70

Sequence based PCA Plot of the family - PF08608 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=6 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay