3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08605

Details:

PFam ID : PF08605

PFam Domain Description : Fungal Rad9-like Rad53-binding

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 45

Average sequence length: 134.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08605	B6K016_SCHJY_208_338	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08605	E7R941_PICAD_579_712	100

Sequence based PCA Plot of the family - PF08605 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=41 Length=8
Motif2 Start=32 Length=8
Motif3 Start=1 Length=8
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay