3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08604

Details:

PFam ID : PF08604

PFam Domain Description : Nucleoporin Nup153-like

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 17

Average sequence length: 339.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08604	Q80UN3_MOUSE_1_96	54.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08604	Q4SJ00_TETNG_121_643	93.7

Sequence based PCA Plot of the family - PF08604 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=61 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay