3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08603

Details:

PFam ID : PF08603

PFam Domain Description : Adenylate cyclase associated (CAP) C terminal

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 159

Average sequence length: 152.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08603	Q4QCB0_LEIMA_538_711	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08603	A4HQ75_LEIBR_98_267	100

Sequence based PCA Plot of the family - PF08603 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=8
Motif2 Start=4 Length=20
Motif3 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay