3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08602

Details:

PFam ID : PF08602

PFam Domain Description : Mgr1-like, i-AAA protease complex subunit

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 28

Average sequence length: 203.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08602	A7TFE5_VANPO_1_470	78.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08602	MGR1_LODEL_178_373	100

Sequence based PCA Plot of the family - PF08602 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=46 Length=8
Motif2 Start=260 Length=8
Motif3 Start=330 Length=11
Motif4 Start=446 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay