3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08597

Details:

PFam ID : PF08597

PFam Domain Description : Translation initiation factor eIF3 subunit

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 179

Average sequence length: 225.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08597	F2PVX3_TRIEQ_8_153	70.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08597	F0VLP3_NEOCA_1_225	100

Sequence based PCA Plot of the family - PF08597 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=201 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay