3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08596

Details:

PFam ID : PF08596

PFam Domain Description : Lethal giant larvae(Lgl) like, C-terminal

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 96

Average sequence length: 316.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08596	C3YDK3_BRAFL_348_768	23.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08596	C4Y030_CLAL4_561_968	100

Sequence based PCA Plot of the family - PF08596 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=55 Length=8
Motif4 Start=163 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay