3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08594

Details:

PFam ID : PF08594

PFam Domain Description : Uncharacterised protein family (UPF0300)

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 10

Average sequence length: 188.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08594	B6JY47_SCHJY_196_375	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08594	YJ14_SCHPO_153_369	100

Sequence based PCA Plot of the family - PF08594 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=121 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay