3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08592

Details:

PFam ID : PF08592

PFam Domain Description : Domain of unknown function (DUF1772)

Number of Sequence in 50% Dataset : 161

Number of Sequence in Full Dataset : 349

Average sequence length: 133.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08592	D7VT12_9SPHI_2_58	96.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08592	A7SRF8_NEMVE_30_152	100

Sequence based PCA Plot of the family - PF08592 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay