3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08590

Details:

PFam ID : PF08590

PFam Domain Description : Domain of unknown function (DUF1771)

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 186

Average sequence length: 64.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08590	Q6FSN7_CANGA_21_86	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08590	F0Y379_9STRA_3_73	100

Sequence based PCA Plot of the family - PF08590 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=34 Length=8
Motif3 Start=54 Length=11
Motif4 Start=24 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay