3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08589

Details:

PFam ID : PF08589

PFam Domain Description : Fungal protein of unknown function (DUF1770)

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 44

Average sequence length: 95.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08589	E6ZJK9_9BASI_2_110	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08589	F0XHM0_9PEZI_10_125	100

Sequence based PCA Plot of the family - PF08589 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=87 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay