3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08580

Details:

PFam ID : PF08580

PFam Domain Description : Yeast cortical protein KAR9

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 68

Average sequence length: 593.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08580	D5GFD9_TUBMM_178_935	28

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08580	A7TTL3_VANPO_35_580	98.5

Sequence based PCA Plot of the family - PF08580 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=117 Length=8
Motif4 Start=295 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay