3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08573

Details:

PFam ID : PF08573

PFam Domain Description : DNA repair protein endonuclease SAE2/CtIP C-terminus

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 95

Average sequence length: 86.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08573	A4SAD4_OSTLU_2_52	94.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08573	A4QWH8_MAGO7_606_721	100

Sequence based PCA Plot of the family - PF08573 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=103 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay