3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08572

Details:

PFam ID : PF08572

PFam Domain Description : pre-mRNA processing factor 3 (PRP3)

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 146

Average sequence length: 212.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08572	E9EZ47_METAR_301_341	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08572	B7FWG8_PHATC_174_463	100

Sequence based PCA Plot of the family - PF08572 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=93 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay