3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08571

Details:

PFam ID : PF08571

PFam Domain Description : Yos1-like

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 115

Average sequence length: 75.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08571	A1CIL0_ASPCL_8_66	39.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08571	E9BSC5_LEIDO_5_111	100

Sequence based PCA Plot of the family - PF08571 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=35 Length=8
Motif2 Start=14 Length=20
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay