3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08569

Details:

PFam ID : PF08569

PFam Domain Description : Mo25-like

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 187

Average sequence length: 283.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08569	Q5CDD9_CRYHO_1_84	55.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08569	B9IH54_POPTR_1_157	100

Sequence based PCA Plot of the family - PF08569 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=316 Length=8
Motif2 Start=2 Length=8
Motif3 Start=235 Length=8
Motif4 Start=158 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay