3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08568

Details:

PFam ID : PF08568

PFam Domain Description : Uncharacterised protein family, YAP/Alf4/glomulin

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 137

Average sequence length: 416.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08568	Q6CFU3_YARLI_61_673	69.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08568	D7M3L3_ARALL_8_581	92.6

Sequence based PCA Plot of the family - PF08568 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=62 Length=8
Motif4 Start=91 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay