3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08566

Details:

PFam ID : PF08566

PFam Domain Description : Mitochondrial import protein Pam17

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 69

Average sequence length: 173.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08566	A7S783_NEMVE_39_227	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08566	PAM17_USTMA_50_228	100

Sequence based PCA Plot of the family - PF08566 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=109 Length=8
Motif3 Start=155 Length=11
Motif4 Start=171 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay