3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08565

Details:

PFam ID : PF08565

PFam Domain Description : Cdc37 Hsp90 binding domain

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 145

Average sequence length: 177.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08565	D7FYI3_ECTSI_92_309	14.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08565	B3SC16_TRIAD_32_273	100

Sequence based PCA Plot of the family - PF08565 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=1 Length=8
Motif3 Start=15 Length=8
Motif4 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay