3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08564

Details:

PFam ID : PF08564

PFam Domain Description : Cdc37 C terminal domain

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 137

Average sequence length: 91.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08564	Q4TCB2_TETNG_1_30	12.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08564	Q4RHE3_TETNG_124_166	99.2

Sequence based PCA Plot of the family - PF08564 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=11 Length=27
Motif2 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay