3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08562

Details:

PFam ID : PF08562

PFam Domain Description : Crisp

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 82

Average sequence length: 53.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08562	E2E4E7_9SAUR_189_214	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08562	E9ISB0_SOLIN_24_87	93.8

Sequence based PCA Plot of the family - PF08562 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay