3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08558

Details:

PFam ID : PF08558

PFam Domain Description : Telomere repeat binding factor (TRF)

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 67

Average sequence length: 226.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08558	C9SAI4_VERA1_130_374	10.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08558	A7TKR0_VANPO_36_333	72

Sequence based PCA Plot of the family - PF08558 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=129 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay