3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08555

Details:

PFam ID : PF08555

PFam Domain Description : Eukaryotic family of unknown function (DUF1754)

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 134

Average sequence length: 89.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08555	Q5CTV5_CRYPV_12_106	16

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08555	E1BD29_BOVIN_3_56	78

Sequence based PCA Plot of the family - PF08555 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay