3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08551

Details:

PFam ID : PF08551

PFam Domain Description : Eukaryotic integral membrane protein (DUF1751)

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 141

Average sequence length: 97.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08551	Q757U1_ASHGO_65_163	82.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08551	C4R2S8_PICPG_52_164	99.2

Sequence based PCA Plot of the family - PF08551 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=42

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay