3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08550

Details:

PFam ID : PF08550

PFam Domain Description : Fungal protein of unknown function (DUF1752)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 147

Average sequence length: 28.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08550	F0XLU9_9PEZI_30_53	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08550	C5GTP0_AJEDR_1_18	90.4

Sequence based PCA Plot of the family - PF08550 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay