3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08549

Details:

PFam ID : PF08549

PFam Domain Description : Fungal domain of unknown function (DUF1750)

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 56

Average sequence length: 467.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08549	E2L849_MONPE_10_90	68

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08549	F0XF22_9PEZI_1_796	100

Sequence based PCA Plot of the family - PF08549 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=110 Length=8
Motif2 Start=199 Length=8
Motif3 Start=143 Length=8
Motif4 Start=51 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay