3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08547

Details:

PFam ID : PF08547

PFam Domain Description : Complex I intermediate-associated protein 30 (CIA30)

Number of Sequence in 50% Dataset : 141

Number of Sequence in Full Dataset : 419

Average sequence length: 153.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08547	E7LSB4_YEASV_118_208	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08547	Q8GYE2_ARATH_35_74	99.7

Sequence based PCA Plot of the family - PF08547 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=1 Length=11
Motif3 Start=74 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay