3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08546

Details:

PFam ID : PF08546

PFam Domain Description : Ketopantoate reductase PanE/ApbA C terminal

Number of Sequence in 50% Dataset : 328

Number of Sequence in Full Dataset : 1461

Average sequence length: 124.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08546	E7LSB4_YEASV_118_208	83.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08546	D8I644_AMYMU_242_306	100

Sequence based PCA Plot of the family - PF08546 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=12 Length=11
Motif2 Start=73 Length=8
Motif3 Start=44 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay