3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08545

Details:

PFam ID : PF08545

PFam Domain Description : 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III

Number of Sequence in 50% Dataset : 132

Number of Sequence in Full Dataset : 2075

Average sequence length: 79.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08545	D2Z4M5_9BACT_206_267	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08545	A3NHC4_BURP6_119_171	100

Sequence based PCA Plot of the family - PF08545 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=17
Motif2 Start=3 Length=11
Motif3 Start=71 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay