3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08544

Details:

PFam ID : PF08544

PFam Domain Description : GHMP kinases C terminal

Number of Sequence in 50% Dataset : 229

Number of Sequence in Full Dataset : 3624

Average sequence length: 81.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08544	D2Z4M5_9BACT_206_267	72.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08544	D2QKK3_SPILD_262_336	91.1

Sequence based PCA Plot of the family - PF08544 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=37 Length=8
Motif2 Start=28 Length=8
Motif3 Start=1 Length=8
Motif4 Start=19 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay