3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08541

Details:

PFam ID : PF08541

PFam Domain Description : 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal

Number of Sequence in 50% Dataset : 182

Number of Sequence in Full Dataset : 2287

Average sequence length: 89.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08541	A4ZVG8_BRAJU_314_357	58.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08541	A1ZRZ1_9BACT_256_357	100

Sequence based PCA Plot of the family - PF08541 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=47 Length=8
Motif3 Start=1 Length=8
Motif4 Start=30 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay