3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08540

Details:

PFam ID : PF08540

PFam Domain Description : Hydroxymethylglutaryl-coenzyme A synthase C terminal

Number of Sequence in 50% Dataset : 77

Number of Sequence in Full Dataset : 600

Average sequence length: 162.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08540	E2LKX2_MONPE_1_104	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08540	D7FXY3_ECTSI_189_518	100

Sequence based PCA Plot of the family - PF08540 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=178 Length=8
Motif3 Start=320 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay