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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08537
Details:

PFam ID : PF08537

PFam Domain Description : Fungal Nap binding protein NBP1

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 12

Average sequence length: 241.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF08537A7TH88_VANPO_1_37890
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF08537C8ZJK3_YEAS8_1_77100
Sequence based PCA Plot of the family - PF08537 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay