3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08536

Details:

PFam ID : PF08536

PFam Domain Description : Whirly transcription factor

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 41

Average sequence length: 118.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08536	C0HIZ1_MAIZE_91_175	23.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08536	A0C761_PARTE_1_132	100

Sequence based PCA Plot of the family - PF08536 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay