3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08535

Details:

PFam ID : PF08535

PFam Domain Description : KorB domain

Number of Sequence in 50% Dataset : 72

Number of Sequence in Full Dataset : 637

Average sequence length: 83.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08535	A1ZKF4_9BACT_14_111	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08535	B2SF82_FRATM_157_252	100

Sequence based PCA Plot of the family - PF08535 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=22 Length=27
Motif2 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay