3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08533

Details:

PFam ID : PF08533

PFam Domain Description : Beta-galactosidase C-terminal domain

Number of Sequence in 50% Dataset : 109

Number of Sequence in Full Dataset : 294

Average sequence length: 56.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08533	A0NKY9_OENOE_614_666	85.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08533	E3ZGE7_LISIV_25_77	99.6

Sequence based PCA Plot of the family - PF08533 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=53 Length=11
Motif3 Start=1 Length=8
Motif4 Start=19 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay