3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08532

Details:

PFam ID : PF08532

PFam Domain Description : Beta-galactosidase trimerisation domain

Number of Sequence in 50% Dataset : 190

Number of Sequence in Full Dataset : 512

Average sequence length: 193.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08532	C2YR75_BACCE_1_90	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08532	C7QFX1_CATAD_394_623	100

Sequence based PCA Plot of the family - PF08532 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=11
Motif2 Start=8 Length=20
Motif3 Start=161 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay