3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08531

Details:

PFam ID : PF08531

PFam Domain Description : Alpha-L-rhamnosidase N-terminal domain

Number of Sequence in 50% Dataset : 154

Number of Sequence in Full Dataset : 457

Average sequence length: 163.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08531	C2YR75_BACCE_1_90	98.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08531	D7C490_STRBB_388_608	100

Sequence based PCA Plot of the family - PF08531 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=40 Length=8
Motif2 Start=3 Length=8
Motif3 Start=16 Length=11
Motif4 Start=103 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay