3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08530

Details:

PFam ID : PF08530

PFam Domain Description : X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain

Number of Sequence in 50% Dataset : 291

Number of Sequence in Full Dataset : 901

Average sequence length: 227.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08530	E3JQ15_PUCGT_88_112	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08530	D7FLX7_ECTSI_718_1099	100

Sequence based PCA Plot of the family - PF08530 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=65 Length=8
Motif3 Start=55 Length=8
Motif4 Start=143 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay