3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08529

Details:

PFam ID : PF08529

PFam Domain Description : NusA N-terminal domain

Number of Sequence in 50% Dataset : 93

Number of Sequence in Full Dataset : 937

Average sequence length: 117.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08529	E3JQ15_PUCGT_88_112	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08529	Q2GDP1_NEOSM_12_163	100

Sequence based PCA Plot of the family - PF08529 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=24 Length=11
Motif3 Start=99 Length=8
Motif4 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay