3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08528

Details:

PFam ID : PF08528

PFam Domain Description : Whi5 like

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 49

Average sequence length: 24.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08528	E3JQ15_PUCGT_88_112	54.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08528	D5GDR0_TUBMM_35_58	93.7

Sequence based PCA Plot of the family - PF08528 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay