3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08525

Details:

PFam ID : PF08525

PFam Domain Description : Opacity-associated protein A N-terminal motif

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 140

Average sequence length: 30.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08525	A7SBI1_NEMVE_23_195	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08525	D0Z0E2_LISDA_39_66	61

Sequence based PCA Plot of the family - PF08525 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay