3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08523

Details:

PFam ID : PF08523

PFam Domain Description : Multiprotein bridging factor 1

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 145

Average sequence length: 71.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08523	B9SEW6_RICCO_9_80	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08523	F0XX55_9STRA_10_88	99.3

Sequence based PCA Plot of the family - PF08523 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay